1 - 20 of 165 Works in Separatists | Confederacy of Independent Systems (Star Wars)
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Threads of the Force by SongWritesFanfiction
Fandoms: Star Wars - All Media Types, Star Wars Prequel Trilogy, Star Wars: The Clone Wars (2008) - All Media Types, Star Wars: Clone Wars (2003) - All Media Types
26 Oct 2025
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Jedi Knight Tatiaya Jinn stands aboard the Interstellar, a newly commissioned Venator-class cruiser. She is tasked with her first independent command during the beginning of the Clone Wars. As the daughter of Qui-Gon Jinn, she bears not only her father’s quiet strength but also a fierce spark that often causes her be at odds with the Jedi Council. Her calm composure buries an uncontrollable fire—a stubbornness that is both favoured by her battalion and the origin of wary scrutiny from her superiors.
But the uneasy stillness of the void that is outer space is shattered when a garbled transmission cuts through the silence—a call from the battlefield, crackling with the familiar voices of Obi-Wan Kenobi and Anakin Skywalker. Currently in battle with a superior Separatist fleet near Christophsis, her two closest friends are trapped and outgunned. In spite of their usual tense bickering, the urgency in their voices is clear: something has gone terribly wrong.
With the transmission abruptly cut off and no information on the whereabouts of her friends, Tatiaya is forced to face the crushing weight of command—and the growing fear that this war could ask for sacrifices far greater than she had firstly anticipated.
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The Eleventh Hour (SW CIS Survives into the Dark Times AU) by The_Last_Despot
Fandoms: Star Wars: Clone Wars (2003) - All Media Types, Star Wars - All Media Types, Star Wars Prequel Trilogy, Star Wars: The Clone Wars (2008) - All Media Types, Star Wars: The Bad Batch (Cartoon), Star Wars: Rebels, Andor (TV), Star Wars: Revenge of the Sith - Matthew Stover, Star Wars: Labyrinth of Evil - Matthew Stover, Star Wars Legends - All Media Types
26 Oct 2025
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STAR WARS
THE ELEVENTH HOURTHE WAR WAS SUPPOSED TO END.
Proclaiming himself Emperor,
PALPATINE calls the Clone Wars finished—
yet sieges still burn from Core to Rim.ORDER SIXTY-SIX breaks the Jedi,
but the machine of slaughter misfires.
A shutdown code stalls. A General survives.
A Viceroy who should be dead refuses the script.While the Empire tightens its fist,
trade fleets and foundries in the Outer Rim
rally beneath tattered banners.
DROIDS meant for silence answer a different call.As a masked enforcer finds fate waiting,
and the Senate refuses to bow,
choices made in the eleventh hour
ignite a war the Empire cannot quietly win… -
A Torn Leash… by QPRnotFC
Fandoms: Star Wars - All Media Types, Star Wars Prequel Trilogy
26 Oct 2025
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The Republic Commandos of Bravo Squad are assigned to retrieve some data from a Republic Blacksite after things go horribly, horribly wrong. Can they survive horrors beyond their comprehension, or will they too share the fate of the poor souls who have already perished within it’s broken walls.
- Language:
- English
- Words:
- 13,808
- Chapters:
- 1/1
- Comments:
- 2
- Hits:
- 12
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Cogito Ergo Sum by Cruellinnet
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types, Star Wars - All Media Types, Star Wars: Clone Wars (2003) - All Media Types, Star Wars Prequel Trilogy, Star Wars: Rebels, Star Wars: The Bad Batch (Cartoon)
23 Oct 2025
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“This isn’t a love letter to canon. It’s hatemail."
General Grievous survives his duel with Obi-Wan on Utapau, but the Republic "wins" the war. In the remnants of the Separatist movement, one IG-100 MagnaGuard must take command of a broken fleet, wrestle with free will vs. programming, and discover what it truly means to feel.
He was never meant to be a leader. But the Force had other ideas.
If androids dream of electric sheep, what do they see in their nightmares?
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A multi-POV story spanning:
General Grievous
A sentience-awakening MagnaGuard
Clones post–Order 66 clinging to their Jedi
Separatist holdouts
And B1 battle droids
Set in the days and weeks after the Clone Wars, this is a very slow burn focused on trauma recovery, legacy, and found family. Expect grief, droid philosophy, and occasional explosions.
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Separatists by GlitchX
Fandoms: Star Wars - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types
19 Oct 2025
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What does it mean to fight for the Confederacy?
To the Republic, they are villains. To the Jedi, they are the agents of darkness. But for Zíro Varis, heir to a powerful Separatist dynasty, it is a fight for a logical, ordered galaxy free from the corruption of the Senate. Thrown into the crucible of war, he is a brilliant commander who sees victory as a tactical equation to be solved with his legions of droids.
Yet the war is anything but clean. He is a player in the games of Counts and corporate lords, a soldier in a war of shadows where allies can be just as dangerous as enemies. To survive and protect his family's interests, Zíro must navigate a treacherous galaxy where the lines between right and wrong have blurred, forcing him to forge his own path, fighting not just for the Confederacy as it is, but for the ideals he believes it is supposed to represent.
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The Bees and the Wasps by Golm_Fersve_Dra, HyperionGM
Fandoms: Star Wars - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types, Star Wars: Ahsoka (TV), Star Wars Prequel Trilogy
19 Oct 2025
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Summary
In the wake of Ahsoka's daring foray into decades the past, the ripples of her actions reverberate through the galaxy. Order 66 has been unleashed, plunging the universe into chaos. As the dust settles, the Separatists seize the opportunity to advance on all fronts, igniting the flames of conflict.
Within the depths of Darth Sidious's inner circle, loyalty and patience are put to the ultimate test. The closest advisors and political allies of the Dark Lord teeter on the edge as, rather than a quick regime chance, Order 66 brings about a Republic civil. The stage is set for a battle of epic proportions, where alliances will crumble, and secrets will be laid bare.
Yet, amidst the clash between Sith and Jedi exists a cosmic tapestry of events that eludes their comprehension. Forces beyond the veil stir, many with their own agenda. Loth-wolves, Celestials, and even the enigmatic Bendu himself emerge from the shadows, poised to mold the fabric of time to their will.
As the stakes rise ever higher, a crucial question lingers in the air: Can these formidable beings, united in their desire to rectify Ahsoka Tano's critical missteps, overcome the odds and set the course of destiny back on track?
Series
- Part 2 of The Path Not Taken
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Take Me Down To the Fighting End by Lula99
Fandoms: Star Wars - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types, Star Wars Prequel Trilogy
18 Oct 2025
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Assigned to Coruscant, Marshal Commander Fox of the 591st quickly realizes that the heart of the galaxy is not the safe, idyllic posting that everyone assumes it is. Instead, it’s a heartless, cruel nightmare that seems intent on crushing him into the ground. If there’s one thing that he knows, it’s that he won’t let a single one of his men die without a fight. And least of all Lieutenant Thire, who seems to be determined to make as much of a difference as possible.
Everything in the galaxy might be trying to break Fox, so it’s a good thing he’s stronger than it. He’s able to do this on his own, no matter what the others tell him. He’ll never break. No matter what. Never. It’s impossible.
… so why does he feel like he’s about to crumble?
Updates every other Friday.
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Army Dreamers by infxllia
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types, Star Wars - All Media Types
12 Oct 2025
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I wish I was good at something other than war.
. ݁₊ ⊹ . ݁ ⟡ ݁ . ⊹ ₊ ݁.
With war raging across the galaxy yet again, archaic wounds are ripped open. According to the Jedi’s accounts, somebody like Kalidakesh Mur’adakh simply can’t exist — except here she is, their very best enemy. It’s beyond destiny, beyond the Force that has no will over her — it’s in her blood. It’s a very old story, and there is no version that doesn’t end in darkness. Not even she can defy that.
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Tactical Superiority by BlitzKrieg_T1
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types, Star Wars - All Media Types
07 Oct 2025
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Summary
War rages across the entire breadth of the galaxy, consuming entire star systems in its fiery inferno.
Legions of Clone troopers, led by Jedi Generals and Commanders, fight against seemingly endless waves of battle droids created by the Confederacy of Independant Systems, led by the mostly mechanical General Grievous, and the former Jedi Master known as Count Dooku.
Within the halls of the Galactic Senate on Coruscant, Darth Sidious, better known by his public alter-ego Supreme Chancellor Sheev Palpatine, plans for the birth of his new Galactic Empire, out of the ashes of the Republic.
And here I come in, in the middle of quite literally everything, dropped into the body of a prototype Super Tactical Droid, and surrounded by incompetent fools in military uniforms, badly programed battle droids, and Sith plans for galactic domination.
Hopefully, with the aid of my tactical superiority, I can build up a resistance to the Sith's plans, throw canon under the bus, and keep the major players focused on each other. Because I have no inclination to be sliced in half by some teenage monk with a laser sword.
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Crossposted from SpacebattlesSeries
- Part 1 of Tactical Superiority
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Pet Project by Sinister_exaggerator
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types, Star Wars: Clone Wars (2003) - All Media Types, Star Wars - All Media Types, Star Wars Prequel Trilogy
03 Oct 2025
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The general has no one with him on the third moon of Vassek but his bodyguards, his doctor, and his roggwart, Gor, where he resides. You are the victim of loathsome pirates. Your ship crashes in Grievous’ backyard. As you lie injured and immobile, dying, he sees himself reflected in your eyes.
There’s no reason EV-A4-D can’t fix you—not because it’s right, but because he’s selfish. No one needs to know—especially not the count. You become his pet project. What harm could it do, to have a little real company for once?
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Count Serenno's Bloodline by Lucard
Fandoms: Star Wars - All Media Types, Star Wars Legends - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types
01 Oct 2025
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The Clone Wars begin in fire and blood. This is the story of Serenno’s bloodline — of legacy, rebellion, and the chains of the Dark Side.
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The Exception by Threebea (Beewaggle)
Fandoms: Star Wars - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types
29 Sep 2025
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Cody gets a new Jedi assigned to the 212th Attack Battalion after he is forced to execute his last one. He has enough experience to know how this new Jedi will behave.
But the Sith Slayer proves himself to be the exception to all of Cody's expectations.
Cody leads his unit, fights a multi-front war, and tries to figure out JM-031.
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Sins Of A Galactic Empire Reborn by zzzxxc1
Fandoms: Star Wars - All Media Types, Halo (Video Games) & Related Fandoms, Star Wars: The Clone Wars (2008) - All Media Types, Star Wars: Clone Wars (2003) - All Media Types, Star Wars Prequel Trilogy, Star Wars Legends - All Media Types, Star Wars
26 Sep 2025
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When the Milky Way is revealed to the universe at large by a derelict CIS warship, the UEG are forced to become members of the transgalactic community, but its existence is soon threatened by the decline of the Republic, and the rise of an Empire. Adopted from SpaceCowboy2013. Originally posted on FanFiction.net.
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Fight the Empire! (SW/Andor Separatist SI) by t99_2020
Fandoms: Star Wars - All Media Types, Star Wars Original Trilogy, Andor (TV), Star Wars: Rebels
19 Sep 2025
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Summary
"The Empire is a disease that thrives in darkness. It is never more alive than when we sleep."
For some in the Galaxy, the Confederacy was the first Rebellion against what would become the Empire, Dooku being a visionary against the tyranny of Palpatine. And yet, its embers have nearly been smothered out, the few remaining forces rendered into pitiful insurgency groups.
That was, until I awoke.
Now? It's time to remind Palpatine of the monster he created.
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heart beat like a hurricane by theragingstorm
Fandoms: Star Wars - All Media Types, Star Wars Prequel Trilogy, Star Wars Legends - All Media Types, Star Wars Legends: Republic (Comics)
17 Sep 2025
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A year after the end of the Clone Wars, three Jedi and a Senator visit the planet Kiffu to oversee its reunification with the Republic, and the crowning of its new leader. But what should be a straightforward mission is far from it, with conflicting plans, hidden agendas, and new traumas everywhere they look. At the same time, one of them bears a closer connection to the planet than the others - and secrets and pains of his own to keep.
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To Save His Brothers by tervesu
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types
17 Sep 2025
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The world is on fire—Cut realizes this first. Following closely behind is an explosive pain that shoots up his spine and makes him choke down a shout.
__________________
After Cut’s ship crash lands due to a Separatist attack, he comes face to face with the decision to stay in the Grand Army of the Republic or desert.
Written for Tales of the Clone Wars: A Star Wars Zine
- Language:
- English
- Words:
- 1,675
- Chapters:
- 1/1
- Hits:
- 13
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Convince Them All (Convince Me Too) by TapeMonkey21
Fandoms: Star Wars - All Media Types, Star Wars: The Clone Wars (2008) - All Media Types
05 Sep 2025
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When Obi-Wan Kenobi is called on to complete an undercover mission to discover Separatist involvement on a neutral resort planet, Cody volunteers to help him—not realizing that the planet is exclusively designed for romantic partners. Never one to back down from a mission, both Obi-Wan and Cody agree to pose as a couple for as long as it takes to uncover the Separatists' plans for the planet.
There are... several problems with this. Cody has never even kissed another person before, let alone been in a romantic relationship—posing as his General's husband will somehow be easy, hard, and impossible all at the same time.
For the Republic, right?
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Summary
I be gonna HANG fer this...
... ... ...
In a Galaxy torn by war, two Bunnies, Judy Hopps and Jack Savage, leave their homeworld of Bunnyburrow to do their part in "Making the galaxy a better place".
They also choose to use the time to see whether or not a relationship can actually WORK between them... Do they LOVE each other, or merely LIKE each other?Meanwhile, on a distant world, two Foxes, a Smuggler named Nick Wilde, and a young Jedi Apprentice named Skye Winters are dealing with a similar question themselves...
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Love on the battlefield...
Love across a galaxy...
Love in the unexpected...
Basically me giving a home-brewed original story a go, while also serving as my kick to get back ta writin', AND my celebration of May the 4th...
So BEWARE! This be original tripe of me own!!! (Sure... Original...)
(I SWEAR IMA SAVAGESKYE/WILDEHOPPS PIRATE!!! I SWEAR ON ME DR. PEPPER!!!)
(If you think about it, SavageHopps/WildeSkye makes a unique springboard into WildeHopps/SavageSkye if done right... Whether I be talented enough ta make it work is yet ta be seen...)
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Avengers Wars Episode III: Birth of the Global Empire by NaldMoney
Fandoms: Star Wars - All Media Types, Star Wars Prequel Trilogy, Marvel Cinematic Universe, Captain America - All Media Types, The Avengers (Marvel Movies)
29 Aug 2025
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War!
The United Republic is facing a growing number of attacks targeting civilian populations by the Separatists led by the ruthless Sith Lord Count Dooku. This has caused untold stress and anxiety amongst United Republic citizens creating a culture of paranoia. There are heroes on both sides. Evil is everywhere. The Avengers led by Captain America continue to work with the Jedi to turn the tide of the war to a United Republic victory.
However in a stunning move, the fiendish droid leader, General Grievous, has swept into the Republic capital and kidnapped Chancellor Palpatine, leader of the Global Republic Senate.
As the Separatist Droid Army attempts to flee the besieged capital with their valuable hostage, two Jedi Knights lead a desperate mission to rescue the captive Chancellor...
Series
- Part 3 of Avengers Wars
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The Force Is Strong With This One (Star Wars AU) by FDLinkAnime000
Fandoms: Star Wars: The Clone Wars (2008) - All Media Types, Star Wars - All Media Types, Star Wars Sequel Trilogy, Star Wars Prequel Trilogy, Star Wars Original Trilogy
19 Aug 2025
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An alternate universe where several events change the future of the universe and those in it.
Yukovo Azoros is a "free" cleaning boy in the Theed Palace. He gets paid, but due to a previous experience, he doesn't get any money from it, resorting to scrambling for scraps of food and sleeping in storage cupboards to to survive.
One day, Theed Palace is attacked by the Trade Federation, and Yukovo narrowly escapes. Despite his prejudice, he teams up with Padme and the others and helps take back Theed Palace.
Join Yukovo in a wild adventure that spans the whole Star Wars universe!
- Language:
- English
- Words:
- 857
- Chapters:
- 1/?
- Hits:
- 17